Package: NEONiso 0.7.0

Rich Fiorella

NEONiso: Tools to Calibrate and Work with NEON Atmospheric Isotope Data

Functions for downloading, calibrating, and analyzing atmospheric isotope data bundled into the eddy covariance data products of the National Ecological Observatory Network (NEON) <https://www.neonscience.org>. Calibration tools are provided for carbon and water isotope products. Carbon isotope calibration details are found in Fiorella et al. (2021) <doi:10.1029/2020JG005862>, and the readme file at <https://github.com/lanl/NEONiso>. Tools for calibrating water isotope products have been added as of 0.6.0, but have known deficiencies and should be considered very experimental currently.

Authors:Rich Fiorella [aut, cre]

NEONiso_0.7.0.tar.gz
NEONiso_0.7.0.zip(r-4.5)NEONiso_0.7.0.zip(r-4.4)NEONiso_0.7.0.zip(r-4.3)
NEONiso_0.7.0.tgz(r-4.4-any)NEONiso_0.7.0.tgz(r-4.3-any)
NEONiso_0.7.0.tar.gz(r-4.5-noble)NEONiso_0.7.0.tar.gz(r-4.4-noble)
NEONiso_0.7.0.tgz(r-4.4-emscripten)NEONiso_0.7.0.tgz(r-4.3-emscripten)
NEONiso.pdf |NEONiso.html✨
NEONiso/json (API)
NEWS

# Install 'NEONiso' in R:
install.packages('NEONiso', repos = c('https://lanl.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/lanl/neoniso/issues

On CRAN:

17 exports 2 stars 1.48 score 93 dependencies 8 scripts 476 downloads

Last updated 2 months agofrom:796983b63d. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 13 2024
R-4.5-winOKSep 13 2024
R-4.5-linuxOKSep 13 2024
R-4.4-winOKSep 13 2024
R-4.4-macOKSep 13 2024
R-4.3-winOKSep 13 2024
R-4.3-macOKSep 13 2024

Exports:calculate_12CO2calculate_13CO2calibrate_ambient_water_linregcalibrate_carbonconvert_NEONhdf5_to_POSIXct_timeconvert_POSIXct_to_NEONhdf5_timecorrect_carbon_ref_cvalcorrect_carbon_ref_outputdelta_to_Rget_Rstdingest_datamanage_local_EC_archiveR_to_deltarestructure_variablesterrestrial_core_sitesterrestrial_gradient_siteswater_isotope_sites

Dependencies:askpasscaretclasscliclockcodetoolscolorspacecpp11curldata.tablediagramdigestdownloaderdplyre1071fansifarverforeachfuturefuture.applygenericsggplot2globalsgluegowergridExtragtablehardhathttripredisobanditeratorsjsonliteKernSmoothlabelinglatticelavalifecyclelistenvlubridatemagrittrMASSMatrixmgcvmimeModelMetricsmunsellneonUtilitiesnlmennetnumDerivopensslparallellypbapplypillarpkgconfigplyrpROCprodlimprogressrproxypurrrR.methodsS3R.ooR.utilsR6RColorBrewerRcpprecipesreshape2rhdf5rhdf5filtersRhdf5librlangrpartscalesshapeSQUAREMstringistringrsurvivalsystibbletidyrtidyselecttimechangetimeDatetzdbutf8vctrsviridisLitewithrzoo

Getting Started with NEONiso

Rendered fromexample_workflow.Rmdusingknitr::rmarkdownon Sep 13 2024.

Last update: 2023-11-27
Started: 2021-02-26

Reference Corrections

Rendered fromreference_corrections.Rmdusingknitr::rmarkdownon Sep 13 2024.

Last update: 2023-07-28
Started: 2022-07-29

Readme and manuals

Help Manual

Help pageTopics
calculate_12CO2calculate_12CO2
calculate_13CO2calculate_13CO2
calibrate_ambient_carbon_Bowling2003calibrate_ambient_carbon_Bowling2003
calibrate_ambient_carbon_linregcalibrate_ambient_carbon_linreg
calibrate_ambient_water_isotopescalibrate_ambient_water_linreg
calibrate_carboncalibrate_carbon
calibrate_watercalibrate_water
carbon_regression_plotscarbon_regression_plots
convert_NEONhdf5_to_POSIXct_timeconvert_NEONhdf5_to_POSIXct_time
convert_POSIXct_to_NEONhdf5_timeconvert_POSIXct_to_NEONhdf5_time
copy_qfqm_groupcopy_qfqm_group
copy_ucrt_groupcopy_ucrt_group
correct_carbon_ref_cvalcorrect_carbon_ref_cval
Correct carbon ref outputcorrect_carbon_ref_output
delta_to_Rdelta_to_R
estimate_calibration_errorestimate_calibration_error
extract_carbon_calibration_data.Rextract_carbon_cal_data
extract_water_calibration_dataextract_water_calibration_data
filter_median_Brock86filter_median_brock86
fit_carbon_regressionfit_carbon_regression
fit_water_regressionfit_water_regression
get_Rstdget_Rstd
ingest_dataingest_data
loocvloocv
manage_local_EC_archivemanage_local_EC_archive
R_to_deltaR_to_delta
restructure_carbon_variablesrestructure_carbon_variables
Wrapper function around restructure_carbon_variables and restructure_water_variables.restructure_variables
restructure_water_variablesrestructure_water_variables
select_daily_reference_dataselect_daily_reference_data
setup_output_filesetup_output_file
swap_standard_isotoperatiosswap_standard_isotoperatios
terrestrial_core_sitesterrestrial_core_sites
terrestrial_gradient_sitesterrestrial_gradient_sites
validate_analytevalidate_analyte
validate_output_filevalidate_output_file
water_isotope_siteswater_isotope_sites
write_carbon_ambient_datawrite_carbon_ambient_data
write_carbon_calibration_datawrite_carbon_calibration_data
write_qfqmwrite_qfqm
write_ucrtwrite_ucrt
write_water_ambient_datawrite_water_ambient_data
write_water_calibration_datawrite_water_calibration_data